All functions

compare_daa_results

Compare the Consistency of Statistically Significant Features

compare_metagenome_results

Compare Metagenome Results

daa_annotated_results_df

Differentially Abundant Analysis Results with Annotation

daa_results_df

DAA Results Dataset

ggpicrust2()

This function integrates pathway name/description annotations, ten of the most advanced differential abundance (DA) methods, and visualization of DA results.

import_MicrobiomeAnalyst_daa_results

Import Differential Abundance Analysis (DAA) results from MicrobiomeAnalyst

kegg_abundance

KEGG Abundance Dataset

ko2kegg_abundance()

Convert KO abundance in picrust2 export files to KEGG pathway abundance

ko_abundance

KO Abundance Dataset

metacyc_abundance

MetaCyc Abundance Dataset

metadata

Metadata for ggpicrust2 Demonstration

pathway_annotation()

Pathway information annotation of "EC", "KO", "MetaCyc" pathway

pathway_daa()

Predictional functional patwhay differential abundance (DA)

pathway_errorbar

The function pathway_errorbar() is used to visualize the results of functional pathway differential abundance analysis as error bar plots.

pathway_heatmap

Create pathway heatmap

pathway_pca()

Perform Principal Component Analysis (PCA) on functional pathway abundance data and create visualizations of the PCA results.