All functions |
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Compare the Consistency of Statistically Significant Features |
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Compare Metagenome Results |
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Differentially Abundant Analysis Results with Annotation |
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DAA Results Dataset |
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This function integrates pathway name/description annotations, ten of the most advanced differential abundance (DA) methods, and visualization of DA results. |
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Import Differential Abundance Analysis (DAA) results from MicrobiomeAnalyst |
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KEGG Abundance Dataset |
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Convert KO abundance in picrust2 export files to KEGG pathway abundance |
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KO Abundance Dataset |
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MetaCyc Abundance Dataset |
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Metadata for ggpicrust2 Demonstration |
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Pathway information annotation of "EC", "KO", "MetaCyc" pathway |
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Predictional functional patwhay differential abundance (DA) |
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The function pathway_errorbar() is used to visualize the results of functional pathway differential abundance analysis as error bar plots. |
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Create pathway heatmap |
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Perform Principal Component Analysis (PCA) on functional pathway abundance data and create visualizations of the PCA results. |