R/daa_annotated_results_df.R
daa_annotated_results_df.Rd
This is a result dataset after processing 'kegg_abundance' through the 'pathway_daa' with the LinDA method and further annotation with 'pathway_annotation'.
daa_annotated_results_df
A data frame with 10 variables:
Method used for adjusting p-values.
Feature being tested.
One group in the comparison.
The other group in the comparison.
Statistical test used.
Adjusted p-value.
P-values from the statistical test.
Class of the pathway.
Description of the pathway.
Map of the pathway.
Name of the pathway.
From ggpicrust2 package demonstration.
Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.