DAA Results Dataset

Source: R/daa_results_df.R

This dataset is the result of processing 'kegg_abundance' through the 'LinDA' method in the 'pathway_daa' function. It includes information about the feature, groups compared, p values, and method used.

daa_results_df

Format

A data frame with columns:

adj_method

Method used for p-value adjustment.

feature

The feature (pathway) being compared.

group1

The first group in the comparison.

group2

The second group in the comparison.

method

The method used for the comparison.

p_adjust

The adjusted p-value from the comparison.

p_values

The raw p-value from the comparison.

Source

From ggpicrust2 package demonstration.

References

Douglas GM, Maffei VJ, Zaneveld J, Yurgel SN, Brown JR, Taylor CM, Huttenhower C, Langille MGI. PICRUSt2 for prediction of metagenome functions. Nat Biotechnol. 2020.