Software

R Packages

MicrobiomeStat

• Purpose: Comprehensive longitudinal microbiome data analysis
• Features:
  • Longitudinal data visualization
  • Statistical analysis tools
  • Interactive reports generation
  • Shiny web application interface
• Resources:
  • Main Repository
  • Shiny Repository
  • Live Shiny App
  • Project Website
  • Function Documentation
  • Comprehensive Wiki

ggpicrust2

• Purpose: Microbiome functional profiling
• Features:
  • PICRUSt2 output visualization
  • Pathway analysis
  • Statistical testing
• Impact Metrics:
  • 97+ GitHub stars
  • 13,000+ CRAN downloads
  • 46+ citations
• Resources:
  • GitHub Repository
  • CRAN Package
  • Publication: Published in Bioinformatics (2023)